PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0105
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 345aa    MW: 39453.1 Da    PI: 7.7052
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0105genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.75.9e-09747444
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                  k  rr+++NReAAr+sR+R ka++++Le     L++  ++
  Gh_D05G0105  7 QKTLRRLAQNREAARKSRLRTKAYVQQLESSRLRLTELEQE 47
                 6889*************************876666665554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-6251No hitNo description
SMARTSM003382.6E-7475IPR004827Basic-leucine zipper domain
PfamPF077161.6E-7554IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.91650IPR004827Basic-leucine zipper domain
CDDcd147086.50E-22860No hitNo description
SuperFamilySSF579593.69E-6851No hitNo description
PROSITE patternPS0003601126IPR004827Basic-leucine zipper domain
SuperFamilySSF512068.08E-24122240IPR018490Cyclic nucleotide-binding-like
Gene3DG3DSA:1.10.287.6301.4E-7122180No hitNo description
Gene3DG3DSA:2.60.120.101.8E-8181240IPR014710RmlC-like jelly roll fold
CDDcd000382.15E-7194240No hitNo description
PROSITE profilePS5004210.506194240IPR000595Cyclic nucleotide-binding domain
SMARTSM002482200265294IPR002110Ankyrin repeat
SuperFamilySSF484034.35E-20270344IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-11272344IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-19273344IPR020683Ankyrin repeat-containing domain
CDDcd002042.35E-20273344No hitNo description
PROSITE profilePS5029722.888273345IPR020683Ankyrin repeat-containing domain
SMARTSM002481.0E-5298327IPR002110Ankyrin repeat
PROSITE profilePS5008813.865298330IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSKSSDQKTL RRLAQNREAA RKSRLRTKAY VQQLESSRLR LTELEQELQR AQQQGIFIAS  60
GLSGDHGHTV AGNAALAFDM EYEDIHAVNM REMIFIMIYV SFDMILGAYL ISNMTALIVK  120
GSKTEKFRDK MADIIKYMNR NKLERDLRNQ IKGHLRLQYE STYTEAAVLQ DIPISIRAKI  180
SQSLYLPYIE NASLFKECSS EFINQIIIRL HEEFFLPGEA IMEQGNVVDQ LYFVCHGVLE  240
GKESNLRVRQ LELDISFHIR RQEAELALRM NGAAYNGDFY QLKSLIRAGA DPNKTDCDGR  300
SPLHLAASKG YEDITSFLIR HPVDINLKDK FGNTPLLESI KNGHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gpm_A7e-162643442115Engineered Protein OR264
4gpm_B7e-162643442115Engineered Protein OR264
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.252551e-102boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389400.11e-157PREDICTED: potassium channel SKOR-like isoform X3
SwissprotQ94A761e-118GORK_ARATH; Potassium channel GORK
TrEMBLW9S1521e-134W9S152_9R
STRINGPGSC0003DMT4000344461e-127(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06960.29e-19OCS-element binding factor 5